Draw up a visual image of the bottom of the boat hull, the foam inbetween and a glassed floor. Imagine a crack or a couple chips from hitting rocks etc. The water gets in through those places and the foam does soak it up, get in contact with any boat dealer that has done enough repair work to know what happens. If the floor is sealed there is no place for the water to transfer out of, drying the foam or limiting its evaporation. The floor I did years ago was so bad and the styrafoam so decomposed that all you had to do was grab it by your hand and pull it from the foam in the hull. All you had to do was squeeze the foam and water ran from between your fingers, it was totally waterlogged.
Sealing the floor is a good way to keep rainwater from getting through the top and water logging the foam but it doesn’t solve the problem of water coming up through any cracks or chips in the hull. If the foam does start soaking up water, and it will, where is it supposed to evaporate out of besides the cracks and chips that it came through in, and that would be very limited.
Like said above if there is a trough and an exit opening to keep it vented, so if the hull does have cracks in it, the water has a place to evaporate out of. You can cut a trough down the center removing the center foam and make a small exit, maybe a 6″ by 4″ in the rear plywood infront of the motor so water can transfer and keep the foam realitively dry, this is the only way Id do it is if the foam has a place to dry from.